Looking for a breakfast that’s cozy, protein-packed, and perfect for meal prep? These Greek Yogurt Apple Meal Prep Jars have all the fall flavor you crave — sweet cinnamon apples layered over creamy Greek yogurt, with the option to add chia seeds, nut butter, or crunchy granola.
They’re simple to make, easy to store, and taste like apple pie meets parfait — but with way more protein and way less sugar. Whether you meal prep for the week or just want a grab-and-go breakfast, these jars check every box: quick, nourishing, and delicious.
You can view all my delicious breakfast meal preps here.
Ingredients & Substitutions
For the Apple Topping:
- 2 large apples, cubed (Honeycrisp or Gala work great)
- 2–4 tbsp water
- 2 tbsp maple syrup (or brown sugar)
- 1 tsp cinnamon, plus more for topping

For the Yogurt Jars:
- 4 cups nonfat Greek yogurt, plain or vanilla
Optional Toppings:
- 1 tbsp chia seeds per jar – adds fiber and omega-3s
- Drizzle of peanut butter, almond butter, or maple syrup – adds healthy fats and sweetness
- Granola – adds crunch and makes it feel like dessert
Substitution ideas:
- Make it vegan: use a dairy-free high-protein yogurt like coconut or soy Greek-style.
- Swap maple syrup for honey if not vegan.
- Add a dash of nutmeg or allspice for deeper fall flavor.
- Mix in a scoop of protein powder for an extra boost.

Helpful Tools
You don’t need much for this recipe — here’s what helps:
- Small saucepan with lid
- Wooden spoon or silicone spatula
- Four glass meal prep jars or mason jars (8–10 oz)
- Measuring spoons and cups
- Fridge space for storing your jars
How to Make This Greek Yogurt Apple Meal Prep Jars Recipe
Step 1 – Cook the Apples
In a small saucepan, combine the chopped apples, water, maple syrup, and cinnamon. Bring to a gentle boil over medium heat, then reduce to a simmer.

Cover and cook for 10–15 minutes, stirring occasionally, until the apples soften and most of the liquid has evaporated.
Remove the lid halfway through to let the extra moisture steam off.

The result should be tender, syrupy apples that smell like warm apple pie!
Step 2 – Assemble the Jars
Spoon 1 cup Greek yogurt into each of four jars. Use plain yogurt for less sugar or vanilla for sweetness.

Step 3 – Add the Apple Topping
Divide the cinnamon-maple apples evenly between the jars, layering them over the yogurt.

Step 4 – Chill and Store
Seal each jar with a lid and store in the fridge up to 4 days.
When ready to eat, top with chia seeds, granola, or nut butter — or enjoy it as-is!

Tips & Tricks
- Use crisp apples: Honeycrisp or Pink Lady hold their texture best.
- Don’t skip the cinnamon: It enhances natural sweetness and balances the yogurt tang.
- Batch cook: Double the apples and use leftovers on toast, oatmeal, or pancakes.
- Texture tip: Layer granola just before serving to keep it crunchy.
- Grab-and-go: These store beautifully in mason jars for quick weekday breakfasts.
Benefits of Greek Yogurt Apple Meal Prep Jars
- High protein: Keeps you full all morning.
- Fiber-rich: Apples and chia seeds support digestion.
- Make-ahead friendly: Perfect for busy weekdays.
- Customizable: Add nuts, seeds, or extra fruit.
- Refined sugar-optional: Sweeten naturally with maple syrup.

Frequently Asked Questions
They last up to 4 days in the fridge when sealed tightly in jars. Add granola or nut butter right before serving to keep it fresh.
Yes! Regular yogurt works fine, but it’s thinner and lower in protein. If you prefer a thicker texture, strain it overnight using cheesecloth.
Absolutely! They’re fun, mess-free, and naturally sweetened. You can even make mini-versions for smaller appetites.
Freezing isn’t ideal — Greek yogurt can separate after thawing. For best texture, keep them refrigerated only.
Yes! Use a thick plant-based yogurt like coconut or soy Greek-style and swap maple syrup for honey if needed. The result is just as creamy and delicious.

Greek Yogurt Apple Meal Prep Jars
Ingredients
For the Apple Topping:
- 2 large apples, cut into cubes
- 2-4 tbsp water
- 2 tbsp maple syrup or brown sugar
- 1 tsp cinnamon plus more for topping
For the Yogurt Jars:
- 4 cups nonfat Greek yogurt (plain or vanilla)
Optional Toppings:
- 1 tbsp chia seeds per jar
- drizzle of peanut butter, almond butter or extra maple syrup
- granola
Instructions
Cook the Apples
- In a small saucepan, add the chopped apples, water, maple syrup, and cinnamon. Bring to a boil over medium heat, then reduce to a simmer. Cover and cook for 10–15 minutes, stirring occasionally, until the apples are soft and most of the liquid has evaporated. Remove the lid halfway through to help the liquid cook off.
Assemble the Jars
- Divide the Greek yogurt evenly between four jars (about 1 cup per jar).
Add the Apple Topping
- Spoon the cooked apple mixture evenly over each yogurt portion.
Chill and Store
- Seal the jars with lids and store in the fridge for up to 4 days. Add any extra toppings as desired, and enjoy for a quick breakfast or snack!
Notes
- Yogurt options: Use plain nonfat Greek yogurt for high protein and low sugar, or vanilla Greek yogurt for extra sweetness.
- Vegan: Make it vegan by using a high protein vegan yogurt (this will change the nutritional info slightly)
- Make it your way: Add chia seeds for fiber, granola for crunch, or a drizzle of peanut butter for healthy fats (not included in nutrition facts).
- Storage: Keeps 4 days in the fridge. Great for grab-and-go meal prep!
Nutrition
Conclusion
These Greek Yogurt Apple Meal Prep Jars are everything you want in a weekday breakfast — quick, satisfying, and full of cozy cinnamon flavor. They make mornings easier, keep you full longer, and feel like a little treat every time you open the fridge.
Prep them on Sunday, and you’ll thank yourself every busy morning of the week!

